Index

_

__init__() (tad.mea_probe.MEAProbe method)

__post_init__() (tad.Raster method)

A

a (tad.metrics.powerlaw.PowerLawFitResult attribute) active_bins (tad.metrics.avalanches.AvalancheResult attribute) add_interval_slot() (tad.Triggers method) add_timed_slot() (tad.Triggers method) allow_new_channels (tad.Raster attribute) amplitudes (tad.Raster attribute)

apply_filter() (tad.MCSData method) apply_to_recording() (tad.mea_probe.MEAProbe method) artifacts (tad.processing_history.OperationRecord attribute), [1] as_arrays() (tad.Raster method) auc_above_baseline (tad.metrics.evoked.EvokedPeakResult attribute) AvalancheResult (class in tad.metrics.avalanches)

B

b (tad.metrics.powerlaw.PowerLawFitResult attribute) baseline_hz (tad.metrics.evoked.EvokedPeakResult attribute) basename (tad.processing_history.DatasetInfo attribute), [1] between() (tad.Raster method) bin_counts() (tad.Raster method) bin_edges (tad.metrics.avalanches.AvalancheResult attribute) (tad.metrics.psth.PSTHResult attribute) (tad.metrics.rates.FiringRateCurveResult attribute)

blank (tad.TimeSlot attribute) blank_period() (tad.MCSData method) Burst (class in tad.metrics.burst) BurstChannelResult (class in tad.metrics.burst) BurstDetectionResult (class in tad.metrics.burst) bursts (tad.metrics.burst.BurstChannelResult attribute)

C

CData (class in tad) centers_log10 (tad.metrics.burst.LogISIThresholdDiagnostics attribute) channel (tad.metrics.burst.BurstChannelResult attribute) channel_ids (tad.processing_history.DatasetInfo attribute), [1] channels (tad.metrics.avalanches.AvalancheResult attribute) (tad.metrics.burst.BurstDetectionResult attribute) (tad.metrics.evoked.EvokedPeakResult attribute) (tad.metrics.isi.ISIResult attribute) (tad.metrics.psth.PSTHResult attribute) (tad.metrics.rates.FiringRateCurveResult attribute) (tad.metrics.synchrony.PearsonSynchronyResult attribute) channels() (tad.Raster method)

check_overlaps() (tad.Triggers method) choose_isi_threshold_logisih() (in module tad.metrics.burst) choose_mask() (tad.MCSData method) clear() (tad.Raster method) compute_crosscorrelation() (in module tad.metrics.crosscorrelation) compute_psth() (in module tad.metrics.psth) convert_digital() (tad.MCSData method) copy() (tad.Raster method) corr (tad.metrics.synchrony.PearsonSynchronyResult attribute) counts (tad.metrics.psth.PSTHResult attribute) created_utc (tad.processing_history.ProcessingHistory attribute) CrossCorrelationResult (class in tad.metrics.crosscorrelation)

D

dataset (tad.processing_history.ProcessingHistory attribute) DatasetInfo (class in tad.processing_history) decode_bool_mask() (in module tad.processing_history) description (tad.TimeSlot attribute) detect_bursts() (in module tad.metrics.burst) detect_digital_falling_edge() (tad.MCSData method) detect_digital_rising_edge() (tad.MCSData method)

detect_spikes() (tad.MCSData method) diagnostics (tad.metrics.burst.BurstChannelResult attribute) dt (tad.metrics.avalanches.AvalancheResult attribute) (tad.metrics.psth.PSTHResult attribute) (tad.metrics.rates.FiringRateCurveResult attribute) dtype (tad.Raster attribute) duration (tad.metrics.burst.Burst attribute) duration() (tad.TimeSlot method)

E

EData (class in tad) electrode_labels (tad.processing_history.DatasetInfo attribute), [1] empty() (tad.Raster class method) encode_bool_mask() (in module tad.processing_history) end (tad.metrics.burst.Burst attribute) (tad.TimeSlot attribute)

events (tad.Raster attribute) evoked_peak_metrics() (in module tad.metrics.evoked) EvokedPeakResult (class in tad.metrics.evoked) exclude_unit (tad.metrics.powerlaw.PowerLawFitResult attribute) export_history_json() (tad.MCSData method) extract_avalanches() (in module tad.metrics.avalanches)

F

file_mtime_utc (tad.processing_history.DatasetInfo attribute), [1] file_size_bytes (tad.processing_history.DatasetInfo attribute), [1] firing_rate() (in module tad.metrics.scalar) firing_rate_curve() (in module tad.metrics.rates) FiringRateCurveResult (class in tad.metrics.rates)

fit_avalanche_powerlaw() (in module tad.metrics.powerlaw) fname (tad.processing_history.DatasetInfo attribute), [1] fr_ch (tad.metrics.rates.FiringRateCurveResult attribute) fr_pop (tad.metrics.rates.FiringRateCurveResult attribute) from_dict() (tad.processing_history.ProcessingHistory class method) from_path() (tad.processing_history.DatasetInfo class method)

G

get_active_channels() (tad.mea_probe.MEAProbe method) get_probe() (tad.MCSData method) get_raster() (tad.MCSData method)

get_traces() (tad.MCSData method) get_trigger_intervals() (tad.Raster method) get_triggers() (tad.MCSData method)

H

hist (tad.metrics.burst.LogISIThresholdDiagnostics attribute)

hist_smooth (tad.metrics.burst.LogISIThresholdDiagnostics attribute)

I

ID (tad.TimeSlot attribute) insert() (tad.Raster method) insert_channel() (tad.Raster method) insert_timestamparray() (tad.Raster method) intervals_bins (tad.metrics.avalanches.AvalancheResult attribute) intra_rate_hz (tad.metrics.burst.Burst attribute)

isi (tad.metrics.isi.ISIResult attribute) isi() (in module tad.metrics.isi) isi_th (tad.metrics.burst.BurstChannelResult attribute) (tad.metrics.burst.LogISIThresholdDiagnostics attribute) isih() (in module tad.metrics.isi) ISIResult (class in tad.metrics.isi)

K

keep_mask (tad.metrics.powerlaw.PowerLawFitResult attribute)

L

lifetimes (tad.metrics.avalanches.AvalancheResult attribute) load() (tad.mea_probe.MEAProbe method) (tad.Raster class method) load_from_json() (tad.Triggers method)

load_json() (tad.processing_history.ProcessingHistory class method) load_mask_and_labels() (tad.MCSData method) load_triggers_from_json() (in module tad) LogISIThresholdDiagnostics (class in tad.metrics.burst)

M

mask_channels() (tad.mea_probe.MEAProbe method) masked_channels (tad.metrics.synchrony.PearsonSynchronyResult attribute) MCSData (class in tad) mean_firing_rate_across_channels() (in module tad.metrics.scalar) mean_inter_event_interval() (in module tad.metrics.scalar) MEAProbe (class in tad.mea_probe) merge() (tad.Raster method) method (tad.metrics.burst.BurstDetectionResult attribute) (tad.metrics.burst.LogISIThresholdDiagnostics attribute) (tad.metrics.synchrony.PearsonSynchronyResult attribute) mode (tad.metrics.isi.ISIResult attribute) module tad.mea_probe tad.metrics.avalanches tad.metrics.burst tad.metrics.crosscorrelation tad.metrics.evoked tad.metrics.isi tad.metrics.powerlaw tad.metrics.psth tad.metrics.rates tad.metrics.scalar tad.metrics.synchrony tad.metrics.utils tad.plotting.burst tad.plotting.isi tad.plotting.psth tad.plotting.rates tad.processing_history

N

n_channels() (tad.Raster method) n_spikes (tad.metrics.burst.Burst attribute)

n_time (tad.metrics.synchrony.PearsonSynchronyResult attribute) name (tad.processing_history.OperationRecord attribute), [1]

O

OperationRecord (class in tad.processing_history)

operations (tad.processing_history.ProcessingHistory attribute) order_channels_by_activity() (in module tad.plotting.rates)

P

p_all (tad.metrics.powerlaw.PowerLawFitResult attribute) p_hat_used (tad.metrics.powerlaw.PowerLawFitResult attribute) p_used (tad.metrics.powerlaw.PowerLawFitResult attribute) params (tad.processing_history.OperationRecord attribute), [1] peak1_idx (tad.metrics.burst.LogISIThresholdDiagnostics attribute) peak2_idx (tad.metrics.burst.LogISIThresholdDiagnostics attribute) peak_hz (tad.metrics.evoked.EvokedPeakResult attribute) peak_latency_s (tad.metrics.evoked.EvokedPeakResult attribute) peak_minus_baseline_hz (tad.metrics.evoked.EvokedPeakResult attribute) pearson_corr_firing_rate() (in module tad.metrics.synchrony) PearsonSynchronyResult (class in tad.metrics.synchrony) per_channel (tad.metrics.burst.BurstDetectionResult attribute) percent_random_spiking() (in module tad.metrics.scalar) plot() (tad.mea_probe.MEAProbe method) (tad.Raster method) plot_bursts_on_raster() (in module tad.plotting.burst)

plot_bursts_spans() (in module tad.plotting.burst) plot_firing_rate_heatmap() (in module tad.plotting.rates) plot_firing_rate_stack() (in module tad.plotting.rates) plot_logisih_threshold() (in module tad.plotting.isi) plot_psth_heatmap() (in module tad.plotting.psth) plot_psth_lines() (in module tad.plotting.psth) plot_raster() (tad.MCSData method) plot_traces_in_grid() (tad.MCSData method) pooled_spike_times() (in module tad.metrics.utils) pop() (tad.Raster method) pop_channel() (tad.Raster method) population_counts (tad.metrics.psth.PSTHResult property) population_rate_hz (tad.metrics.psth.PSTHResult property) PowerLawFitResult (class in tad.metrics.powerlaw) ProcessingHistory (class in tad.processing_history) PSTHResult (class in tad.metrics.psth)

R

Raster (class in tad) rate_hz (tad.metrics.psth.PSTHResult attribute) record() (tad.processing_history.ProcessingHistory method)

relabel_channels() (tad.Raster method) remove_artifacts_from_trigger() (tad.MCSData method) response_probability() (in module tad.metrics.evoked) rmse (tad.metrics.powerlaw.PowerLawFitResult attribute)

S

sampling_frequency (tad.processing_history.DatasetInfo attribute), [1] save() (tad.mea_probe.MEAProbe method) (tad.Raster method) save2json() (tad.Triggers method) save_json() (tad.processing_history.ProcessingHistory method) save_mask_and_labels() (tad.MCSData method) save_scalar_metric() (in module tad.metrics.scalar) session_id (tad.processing_history.ProcessingHistory attribute) set_mask() (tad.MCSData method) set_state_getter() (tad.processing_history.ProcessingHistory method) shift() (tad.Raster method) size_definition (tad.metrics.avalanches.AvalancheResult attribute)

sizes (tad.metrics.avalanches.AvalancheResult attribute) slots (tad.Triggers attribute) snapshot_state() (tad.processing_history.ProcessingHistory method) sort_slots() (tad.Triggers method) spike_count() (in module tad.metrics.scalar) start (tad.metrics.burst.Burst attribute) (tad.TimeSlot attribute) state_after (tad.processing_history.OperationRecord attribute), [1] state_before (tad.processing_history.OperationRecord attribute), [1] state_hash() (tad.processing_history.ProcessingHistory method) stim_times_used (tad.metrics.psth.PSTHResult attribute) stream_id (tad.processing_history.DatasetInfo attribute), [1] summary (tad.processing_history.OperationRecord attribute), [1]

T

t (tad.metrics.psth.PSTHResult attribute) (tad.metrics.rates.FiringRateCurveResult attribute) t_post (tad.metrics.psth.PSTHResult attribute) t_pre (tad.metrics.psth.PSTHResult attribute) tad.mea_probe module tad.metrics.avalanches module tad.metrics.burst module tad.metrics.crosscorrelation module tad.metrics.evoked module tad.metrics.isi module tad.metrics.powerlaw module tad.metrics.psth module tad.metrics.rates module tad.metrics.scalar module tad.metrics.synchrony module tad.metrics.utils module

tad.plotting.burst module tad.plotting.isi module tad.plotting.psth module tad.plotting.rates module tad.processing_history module tail_fraction (tad.metrics.powerlaw.PowerLawFitResult attribute) TimeSlot (class in tad) timestamp_utc (tad.processing_history.OperationRecord attribute), [1] to_dict() (tad.processing_history.DatasetInfo method) (tad.processing_history.OperationRecord method) (tad.processing_history.ProcessingHistory method) to_json() (tad.processing_history.ProcessingHistory method) tracked_operation() (in module tad.processing_history) Triggers (class in tad) triggers (tad.Raster attribute) tstart (tad.metrics.avalanches.AvalancheResult attribute) (tad.metrics.burst.BurstDetectionResult attribute) (tad.metrics.isi.ISIResult attribute) (tad.metrics.rates.FiringRateCurveResult attribute) tstop (tad.metrics.avalanches.AvalancheResult attribute) (tad.metrics.burst.BurstDetectionResult attribute) (tad.metrics.isi.ISIResult attribute) (tad.metrics.rates.FiringRateCurveResult attribute)

U

unmask_channels() (tad.mea_probe.MEAProbe method)

V

valley_idx (tad.metrics.burst.LogISIThresholdDiagnostics attribute)

variable (tad.metrics.powerlaw.PowerLawFitResult attribute)

X

x_all (tad.metrics.powerlaw.PowerLawFitResult attribute)

x_used (tad.metrics.powerlaw.PowerLawFitResult attribute)